PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00001g02003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YB
Protein Properties Length: 163aa    MW: 17533.4 Da    PI: 5.3196
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00001g02003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.81.8e-5426120195
                     NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                               vreqdr+lPian++rimkk lPanaki+k+ak+tvqecvsefisf+tseasdkcq+ekrktingddl+wal+tlGfedy+eplk+
  Peinf101Scf00001g02003.1  26 VREQDRYLPIANIGRIMKKGLPANAKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLIWALGTLGFEDYIEPLKA 110
                               69*********************************************************************************** PP

                     NF-YB  86 ylkkyreleg 95 
                               yl +yre ++
  Peinf101Scf00001g02003.1 111 YLIRYREGDT 120
                               ******9665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.6E-5123123IPR009072Histone-fold
SuperFamilySSF471132.79E-3829123IPR009072Histone-fold
PfamPF008081.5E-273296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-196078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.5E-197997No hitNo description
PRINTSPR006152.5E-1998116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSEAPGSPGG GGSHDSGGDR SPQSNVREQD RYLPIANIGR IMKKGLPANA KIAKEAKDTV  60
QECVSEFISF ITSEASDKCQ KEKRKTINGD DLIWALGTLG FEDYIEPLKA YLIRYREGDT  120
KGSARGGDAS ARKDIVGGQL GSSTQFVYDG SFTQGLDYGN SQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4626117192Transcription factor HapC (Eurofung)
4g92_B2e-4626117192Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754433e-63HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074252.11e-103PREDICTED: nuclear transcription factor Y subunit B-10-like
RefseqXP_015074253.11e-103PREDICTED: nuclear transcription factor Y subunit B-10-like
SwissprotQ8VYK49e-78NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0V0HI521e-104A0A0V0HI52_SOLCH; Putative ovule protein
STRINGVIT_13s0019g03600.t011e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.19e-72nuclear factor Y, subunit B10